.. _tutorials:

Tutorials
=========

Tutorials for preparing the input files.

.. toctree::
   :maxdepth: 2

   tutorials/preparation

Preparing the receptor with CAMPARI (recommended).

.. toctree::
   :maxdepth: 1

   tutorials/campari_prep

Preparing the input files and running SEED with Amber/GAFF.

.. toctree::
   :maxdepth: 1

   tutorials/gaff_preparation

Analysis of the outputs of a SEED run.

.. toctree::
  :maxdepth: 2
  
  tutorials/output 

.. _test_cases:
  
Test cases on relevant examples from literature.

.. toctree::
   :maxdepth: 2

   tutorials/test_cases